de_toolkit
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detk Quickstart
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de
- Differential Expression
enrich
- Set Enrichment Methods
filter
- Filtering Count Matrices
norm
- Normalizing Count Matrices
outlier
- Outlier Identification
stats
- Count Matrix Statistics
transform
- Count Transformation
util
- Counts and Column Data File Utilities
Patsy-lite
wrapr
- Thin wrapper for running R scripts
de_toolkit
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B
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C
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E
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F
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G
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M
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O
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P
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R
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S
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W
B
BaseStats (class in de_toolkit.stats)
C
check_r() (in module de_toolkit.wrapr)
check_r_package() (in module de_toolkit.wrapr)
ColDist (class in de_toolkit.stats)
ColZero (class in de_toolkit.stats)
CountPCA (class in de_toolkit.stats)
E
Entropy (class in de_toolkit.stats)
entropy() (in module de_toolkit.outlier)
F
fgsea() (in module de_toolkit.enrich)
G
get_r_path() (in module de_toolkit.wrapr)
M
metadata_out (de_toolkit.wrapr.WrapR attribute)
O
output (de_toolkit.stats.BaseStats attribute)
(de_toolkit.stats.ColDist attribute)
(de_toolkit.stats.ColZero attribute)
(de_toolkit.stats.CountPCA attribute)
(de_toolkit.stats.Entropy attribute)
(de_toolkit.stats.RowDist attribute)
(de_toolkit.stats.RowZero attribute)
(de_toolkit.wrapr.WrapR attribute)
P
params_out (de_toolkit.wrapr.WrapR attribute)
plog() (in module de_toolkit.transform)
properties (de_toolkit.stats.ColDist attribute)
(de_toolkit.stats.ColZero attribute)
(de_toolkit.stats.CountPCA attribute)
(de_toolkit.stats.Entropy attribute)
(de_toolkit.stats.RowZero attribute)
R
retcode (de_toolkit.wrapr.WrapR attribute)
RowDist (class in de_toolkit.stats)
RowZero (class in de_toolkit.stats)
S
shrink() (in module de_toolkit.outlier)
stderr (de_toolkit.wrapr.WrapR attribute)
stdout (de_toolkit.wrapr.WrapR attribute)
success (de_toolkit.wrapr.WrapR attribute)
summary() (in module de_toolkit.stats)
W
WrapR (class in de_toolkit.wrapr)
wrapr() (in module de_toolkit.wrapr)
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